This is an automated email from the git hooks/post-receive script. It was generated because a ref change was pushed to the repository containing the project "MoleCuilder". The branch, GUI_TesselatedLargeMolecules has been updated via 71ec5f12bad3f9ca07448c022d49cd6cf4cba571 (commit) via 94444b5f4bd072f57b46989474a7407caf6a75c4 (commit) via 98e539ae2870958646d3af1faf75d84de2de0941 (commit) via 475d81cdae13f55cb3ab1a22ec9ea5784cec122d (commit) via 655f68de8bef7d0db47490198f9ddcc88ed29267 (commit) via e84c92bda5070ea442b1bbec14dafcf8fc69587f (commit) via 5a93de00c8f02283320b822aec6504f20d0822c3 (commit) via 3d33f4c3066f85982c6ed23a84bd8e9693f27cdb (commit) via c5a4e7f18f1f16913e26e27f9a919f933ee9e468 (commit) via 5df432a62c45c377195b2c1799e3122e1f2a25ee (commit) via 50c306d9853a916d7ca381740c48dcd24e72f602 (commit) via f84ff5bcec8b1dfcb0149eae79795d53ffa866ea (commit) via 0d1c15e4d7f98048440c8168616f255654632a55 (commit) from 197e264ced646aa6c0bc234550e7c76006790bef (commit) Those revisions listed above that are new to this repository have not appeared on any other notification email; so we list those revisions in full, below. - Log ----------------------------------------------------------------- commit 71ec5f12bad3f9ca07448c022d49cd6cf4cba571 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sat Dec 13 09:09:40 2014 +0100 tempcommit: SelectionBox is drawn again when molecule is fully shown. - SelectionBox is not correctly updated. commit 94444b5f4bd072f57b46989474a7407caf6a75c4 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 21:38:29 2014 +0100 FIX: Bonds from new molecules are instantiated, too. - when filling in molecules, initially empty molecules are created and atoms added lateron. Added atoms would not add their already present atoms but only new ones via an Observer update. Now when an atom is inserted, all bonds if any are added. commit 98e539ae2870958646d3af1faf75d84de2de0941 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 21:05:41 2014 +0100 tempcommit: New update scheme for QtMoleculeList requires changing flag to prevent VisibilityChanged() trigger. commit 475d81cdae13f55cb3ab1a22ec9ea5784cec122d Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 20:43:05 2014 +0100 tempcommit: Extracted add/removeItem in QtMoleculeList, no more complete refilling on update. - this is unfinished as we can't find the item to a molecule that is about to be removed. commit 655f68de8bef7d0db47490198f9ddcc88ed29267 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 19:41:27 2014 +0100 Undo/Redobuttons are grayed out when respective Action not possible. commit e84c92bda5070ea442b1bbec14dafcf8fc69587f Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 19:22:55 2014 +0100 Extracted removeAtomsinMolecule from molecule class. - this is necessary since World will automatically remove empty molecules. commit 5a93de00c8f02283320b822aec6504f20d0822c3 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 19:13:18 2014 +0100 tempcommit: Fixes due to molecules being automatically removed. commit 3d33f4c3066f85982c6ed23a84bd8e9693f27cdb Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 19:03:06 2014 +0100 tempcommit: Fixes to RemoveAction. commit c5a4e7f18f1f16913e26e27f9a919f933ee9e468 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 18:50:58 2014 +0100 tempcommit: Fixes to World destroying empty molecules. commit 5df432a62c45c377195b2c1799e3122e1f2a25ee Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 18:43:03 2014 +0100 tempcommit: Fixes to extension of MoleculeIdAction. commit 50c306d9853a916d7ca381740c48dcd24e72f602 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 18:29:46 2014 +0100 Added new RemoveAction for molecules. - also add regression test. commit f84ff5bcec8b1dfcb0149eae79795d53ffa866ea Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 09:28:58 2014 +0100 Extended UndoRedoHelpers by AddingMultipleMoleculesfromAtomicInfo. commit 0d1c15e4d7f98048440c8168616f255654632a55 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Dec 12 09:28:30 2014 +0100 Extended selection action for Molecule ids to multiple ids. ----------------------------------------------------------------------- Summary of changes: src/Actions/ActionQueue.cpp | 10 + src/Actions/ActionQueue.hpp | 12 + src/Actions/GlobalListOfActions.hpp | 1 + src/Actions/Makefile.am | 3 + src/Actions/MoleculeAction/RemoveAction.cpp | 122 +++++++++++ .../RemoveAction.def} | 24 ++- .../RemoveAction.hpp | 8 +- .../SelectionAction/Atoms/NotAtomByIdAction.def | 1 - .../Molecules/MoleculeByIdAction.cpp | 65 +++++-- .../Molecules/MoleculeByIdAction.def | 16 +- .../Molecules/NotMoleculeByIdAction.cpp | 64 +++++-- .../Molecules/NotMoleculeByIdAction.def | 16 +- src/Actions/UndoRedoHelpers.cpp | 39 ++++- src/Actions/UndoRedoHelpers.hpp | 9 +- src/Actions/WorldAction/RepeatBoxAction.cpp | 8 +- src/Fragmentation/Exporters/ExportGraph.cpp | 3 +- src/Graph/unittests/AdjacencyListUnitTest.cpp | 3 +- src/MoleculeLeafClass.cpp | 7 +- .../Views/Qt4/Qt3D/GLMoleculeObject_molecule.cpp | 77 +++++--- .../Views/Qt4/Qt3D/GLMoleculeObject_molecule.hpp | 6 + src/UIElements/Views/Qt4/Qt3D/GLWorldScene.cpp | 10 +- src/UIElements/Views/Qt4/QtMoleculeList.cpp | 216 +++++++++++++------- src/UIElements/Views/Qt4/QtMoleculeList.hpp | 6 + src/UIElements/Views/Qt4/QtToolBar.cpp | 59 +++++- src/UIElements/Views/Qt4/QtToolBar.hpp | 19 ++- .../Views/Qt4/QtToolBar_QtFavoriteActions.cpp | 1 - src/World.cpp | 1 + src/molecule.cpp | 6 +- src/molecule.hpp | 7 +- tests/regression/Makefile.am | 1 + .../Molecules/Remove/post/id0_2_missing.pdb | 38 ++++ .../regression/Molecules/Remove/post/water_box.pdb | 44 ++++ .../regression/Molecules/Remove/pre/water_box.pdb | 50 +++++ .../testsuite-molecules-remove.at} | 48 +++-- tests/regression/Molecules/testsuite-molecules.at | 3 + .../post/{id4_missing.xyz => id2_4_missing.xyz} | 5 +- .../post/{water_id4.xyz => water_id2_4.xyz} | 5 +- .../testsuite-selection-select-molecule-by-id.at | 10 +- .../testsuite-selection-unselect-molecule-by-id.at | 10 +- 39 files changed, 812 insertions(+), 221 deletions(-) create mode 100644 src/Actions/MoleculeAction/RemoveAction.cpp copy src/Actions/{GraphAction/DestroyAdjacencyAction.def => MoleculeAction/RemoveAction.def} (59%) copy src/Actions/{AtomAction => MoleculeAction}/RemoveAction.hpp (61%) create mode 100644 tests/regression/Molecules/Remove/post/id0_2_missing.pdb create mode 100644 tests/regression/Molecules/Remove/post/water_box.pdb create mode 100644 tests/regression/Molecules/Remove/pre/water_box.pdb copy tests/regression/Molecules/{ChangeBondAngle/testsuite-molecules-change-bond-angle.at => Remove/testsuite-molecules-remove.at} (53%) rename tests/regression/Selection/Molecules/MoleculeById/post/{id4_missing.xyz => id2_4_missing.xyz} (99%) rename tests/regression/Selection/Molecules/MoleculeById/post/{water_id4.xyz => water_id2_4.xyz} (65%) hooks/post-receive -- MoleCuilder