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The branch, Fix_ConvexizeNonconexEnvelope has been created at ab72314934e071f1c33d4d2875f9d27458fb67da (commit) - Log ----------------------------------------------------------------- commit ab72314934e071f1c33d4d2875f9d27458fb67da Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 21:13:43 2014 +0200 Changed verbosities in tesselation a lot to make readable. commit 743052c22b9d7f7591cac44bd5eb2e484a5c3e42 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 20:26:20 2014 +0200 FIX: Changed all performCriticalExit() into ASSERT() in tesselation. commit d4f9bb3aba23969df122e85d3f5307a0398e5c3f Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 20:26:03 2014 +0200 Changed some verbosities in Tesselation code. commit a07e7053630cf9faa4f5fc18481901cc4f79ab96 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 20:24:52 2014 +0200 FIX: RemoveTesselationLine() needs to erase line from OpenLines if present. commit 8e3d9d4f8f83fa748239e028a866abd8ab8c70d0 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 20:23:50 2014 +0200 FIX: RemovePointFromTesselatedSurface() needs to pick smallest angle when polygon is not convex. commit 10a01718c3a6190cfc9de345527be832011b1f87 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 18:25:23 2014 +0200 FIX: AddTesselationLine() would onl work in initial tesselation phase. - the CandidateForTesselation instance is NULL when we convexize and this was not correctly processed by AddTesselationLine(). commit e13991dce439602624fbb51421d9bf3c0a816396 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 25 18:24:30 2014 +0200 Added SphereRadius parameter to ConvexEnvelopeAction. commit 128616612a611878bc0a942bbc2f1eecab5d0c9a Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Tue Sep 23 18:14:18 2014 +0200 FIX: Setting ActionQueue::_lastchangedaction without heeding whether Action failed is bad. - causes segfault when notification informs about change and _lastchangeaction is still NULL (as the very first Action failed). - we now only notify when action succeeded. commit 56eee6e652088e82274fd47b6fd2b3b70e898feb Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Mon Sep 22 22:10:11 2014 +0200 FIX: QSeisPlotPage's dstor calls deinitializeLayout() only when initialized. commit 78c9509cba8ec6569d3fee2987607785743b7e09 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 13:19:18 2014 +0200 FIX: QtHomologyList's plot widget was too high (and fixed). - also the sizes of splitter's children in QtHomologyList are now stored to settings (as QsizePolicy does not have an effect on a splitter). commit 71350daef4a36bbd039aa43a5712363fddfc5a00 Merge: 14bede3 c7fe90c Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 09:13:05 2014 +0200 Merge branch 'Experiment_Amylose_Water' into Candidate_v1.4.9 Conflicts: doc/userguide/userguide.xml tests/regression/Atoms/testsuite-atoms.at - mirror-atoms and translate-to-origins occupied the same places. commit 14bede3ba3e8e2630b00858a76285e0e0439b26a Merge: 5340768 46ce1c8 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 09:11:02 2014 +0200 Merge branch 'DynamicMolecules' into Candidate_v1.4.9 commit 5340768e903e79d978c07f327466f51ba993a139 Merge: 2ed3bf3 9d1320c Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 09:10:10 2014 +0200 Merge branch 'Refactoring_PotentialActions' into Candidate_v1.4.9 commit 2ed3bf3dd38da578e40e717928f565e66746d252 Merge: 7acbfc4 bbf6dcd Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 09:10:04 2014 +0200 Merge branch 'MirrorAtoms' into Candidate_v1.4.9 commit 7acbfc4fee584acd54942911e6d4b9c73149b2c7 Merge: 9bce964 054d47f Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 19 09:09:53 2014 +0200 Merge branch 'ActionFixes' into Candidate_v1.4.9 commit bbf6dcd010a0439f2e1a441678550e5a56e1cf30 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Wed Sep 10 01:55:39 2014 +0200 Added AtomMirrorAction. - also added regression tests. commit 9d1320cc5a22b299fc35b50bb519d8bd8b13bc21 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 12 09:54:12 2014 +0200 Extracted SavePotentialsAction. - PotentialTrainer::StorePotentials removed. - Fit...Actions do not store anymore. - TESTFIX: potential regression tests now use save-potentials and compare against stored file. commit 5c6b432e38763ef95f591b8dae5078375f60c46c Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Fri Sep 12 09:39:58 2014 +0200 Extracted ParsePotentialsAction from FitCompoundPotentialAction. commit 21c1c5cb23b27248af841d0fb4f026616b41b8c5 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 11 22:38:05 2014 +0200 Split FitPotentialAction into two actions. - FitPotentialAction fits just a single potential. - new FitCompoundPotentialAction fits via a potential file. - PotentialTrainer contains all helper functions and common code. commit 46ce1c8a9f9a6af80b7fcf736dcf57f11b47f8b7 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Aug 17 20:30:46 2014 +0200 FIX: World::setTime() now first copies Bondgraph and then sets the time. - thus we do not cause GUI updates with each addBond(). commit 8cc22fe4af9577450a3d00a92ea000018b14b366 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Aug 17 00:56:59 2014 +0200 Changed how trajectories are stored, not as vecor but as map. - AtomInfo and atom_bondedparticleinfo now store map<unsigned int, ...> instead of vector<...>. - UpdateSteps() -> UpdateStep(unsigned int), same with RemoveSteps() and AppendTrajectorySteps() and RemoveTrajectorySteps(). - made changes necessary to UndoRedoHelpers and two Actions. - TESTFIX: AtomObserverUnitTest failed as we longer "notify" in case already set element is set again. We now check that setType() sets to different element. commit c7fe90cd467a73a0ef32b5c631534b2928c0b926 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Aug 14 22:03:53 2014 +0200 Added TranslateToOriginAction. - also added regression test. commit f4b626a1fbf68b80e642bace1770e5577aeed6d8 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Tue Aug 26 10:48:59 2014 +0200 Added AverageMoleculeForceAction for measuring average force acting on a molecule. commit 7a7b3408459dae333637248d2b3e0bebed301975 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Aug 17 12:10:08 2014 +0200 FIX: atom's copy cstor does not need to copy positions, ... again. commit 054d47f3558f3549e6480280882111c4df74ad9f Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Thu Sep 11 09:31:52 2014 +0200 FIX: (Not)AtomByIdAction would fail with assert if not atoms are present. - none are selected, we just fail the Action but removed assert. commit 9bce96471db8bac23510c29ddaa7dbcabf15d765 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Sep 14 21:26:46 2014 +0200 DOCU: Fixed all missing links in userguide. - each section now has a linkname. commit f73e0644af36b981af22685b57300f77cb7b0937 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Sep 14 20:25:06 2014 +0200 DOCU: Added all missing Actions to userguide. - removed XFAIL from associated CodeChecks test. commit c62e275561001d2ecd22b8489ac47810fd64e5ce Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Sep 14 18:23:41 2014 +0200 Added CodeChecks test that every action appears in the userguide. - test is marked as XFAIL for the moment. commit 2a6d8c7977c1f749091ead256bcca349538a8b59 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Sep 14 20:24:38 2014 +0200 DOCUFIX: Doyxygen formula was broken in SaturationDistanceMaximizer. commit ced7f04bae3c2939e0888dfb7559e4b0f342a808 Author: Frederik Heber <heber@ins.uni-bonn.de> Date: Sun Sep 14 20:24:23 2014 +0200 VersionAction also prints to log, not only to status. ----------------------------------------------------------------------- hooks/post-receive -- MoleCuilder