[SCM] branch Candidate_v1.4.12 created. v1.4.11-80-g0ea4ddb

5 Aug 2015


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The branch, Candidate_v1.4.12 has been created
        at  0ea4ddbf6833adf1a4a2ada1981935715775879f (commit)

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commit 0ea4ddbf6833adf1a4a2ada1981935715775879f
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Aug 2 14:05:47 2015 +0200

    Set version to v1.4.12.

commit c307ba4e4b46954d39964089972d5cb1f29a6f40
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Aug 2 14:01:05 2015 +0200

    DOCU: Enhanced description of test policy on version update.

commit 10aee4386f0c1b8e07b3a74e7d97d99ef2622bc8
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Aug 3 11:25:02 2015 +0200

    Cleaned up ActionQueue's interface: Actions are always cloned.
    
    - Action's dstor needs to be public as we have a clone() function.
    - ActionRegistrys' (and AQ's) getActionByName now returns const ref. We must
      not return a ptr as it may not get deleted elsewhere. We are handing out
      prototypes.
    - queueAction(action*,...) is private to prevent leakage, queueAction(string,
      ...) is the public interface.
    - some other small functions are now private, too.
    - MakroActions now need to clone() the prototype on prepare() and delete them
      on unprepare().
    - ActionSequence deletes contained actions.
    - FIX: ActionSequenceUnitTest cannot check on not-called property of removed
      actions anymore as these are gone now (they are deleted on removal and they
      are cloned on insertion).
    - DOCU: Updated documentation on Actions.

commit 94232b82bf9b20300fb870881f38c94ce0857bdd
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Aug 3 11:20:16 2015 +0200

    Action::isActive() is now const member function.
    
    - also changed TextMenu's items.
    - mutexes in ActionQueue are now mutable.

commit 725a1da23441218ebfe802d5508feedc1a4a8b46
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jul 31 19:09:47 2015 +0200

    FIX: Adjacency's operator<<() printed fixed number (3) of entries.
    
    - this caused seg violations and occurred through memcheck run.
    - it was a copy&paste error from trianglematcher's.

commit 3532b77102b83baecdd39fade5a59f5aaf230ed0
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jul 31 12:21:56 2015 +0200

    DISTFIX: adjacencymatcher and trianglematcher are check_PROGRAMS, not bin_...
    
    - as such they are not installed and hence .in files must not use AUTOTEST_PATH
      but topdir (top build directory).
    - also in GuiChecks, regresssion, and Tesselations tests TESTSUITE was made
      dependent on them but target check and installcheck only actually depend
      on the wrapper scripts (molecuilder, ...).

commit 8e790ebd981dac78daa03f5e06560ba8ea84a21a
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jul 31 11:27:06 2015 +0200

    DISTFIX: Additional types.hpp in AdjacencyMatcher/Makefile.am.

commit c66ae6684084ff864820af9b907d9f3b9725530d
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 18:36:06 2015 +0200

    TESTFIX: Added AdjacencyMatcher to correctly compare .adj files in save-adjacency regression test.
    
    - GuiChecks sees a different (but still valid) ordering in the .adj file in the
      save-adjacency regression test.

commit f7054cab5c6c0b7c73d7b4866501383e989b50da
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 18:13:44 2015 +0200

    TESTFIX: selection molecule by name had escaped ticks.
    
    - also changed GuiCheck tests.

commit 80f678157992ab9328be5ba384216ae6e1548684
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 12:03:43 2015 +0200

    FIX: Added Parameters Value_Elements to correctly set vector of elements from string.
    
    - this fixes that fit-potential action is not correctly called from python
      scripts. There, we require correct setter of a value from a given string.
      As all arguments to a python command must be given as single string,
      even if it is a vector of arguments, we must correctly decode this string
      again.

commit c569220c375bbffdf838cc2cfd11de122bf57a86
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jul 8 12:33:49 2015 +0200

    TESTFIX: regression test DepthFirstSearch had extra linebreak.

commit 024c65bc14cdcf98c86fcf1892e8bc3b3c0c6764
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jul 8 08:47:52 2015 +0200

    TESTFIX: atom selection regression tests with shapes were very noisy and hence very slow.

commit 7a0456949e5c8efe51fc75d2a5902483c296feec
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jul 6 15:07:00 2015 +0200

    TESTFIX: regression test SubgraphDissection Redo was broken.
    
    - also changed derived GuiChecks test.

commit 42b40a4b4a9210b1ed60a0be93acd12541dedde9
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jun 19 13:45:49 2015 +0200

    Added TriangleMatcher to safely compare tesselation .dat files.
    
    - is used in tests/regression Tesselations, tests/Tesselations, and has its own
      regression test, too. Also added tests/GuiChecks.
    - added trianglematcher to testsuite dependencies.

commit a82f61a466e15715e16f9470a56c3bdadfcb3895
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 14:39:16 2015 +0200

    Added Action::setOptionValue() which allows setting the option via a string.
    
    - this is preparatory for allowing the creation of MakroActions inside the
      code. We need to set the options without going through dialogs in some
      way or another and without being completely inside the Actions as is the
      case for the COMMAND variants and the python function calls.

commit 143263bb92532b8d3e50535a2c7cfae698a6ab6d
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 08:15:39 2015 +0200

    Added getSelected..Ids() for both atoms and molecules.
    
    - added static function getKey() to _take in Helpers.

commit fe0ddfc870329d8adcaf7269129b4690ddd98db4
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 22:58:57 2015 +0200

    FIX: atom_atominfo lacked some notifies or had them wrong.
    
    - ElementChanged only when element actually changes it not helpful
      (QtElementList has then no chance of detecting new atoms with default
      element of hydrogen).
    - TrajectoryChanged was signalled only when current timestep was added or
      removed, rather we signal always and assert that we do not remove or append
      the current time step.

commit f5452477d87da2369a118585276d5b6793a46480
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jun 21 15:34:40 2015 +0200

    FIX: Molecule has new signal IndexChanged.
    
    - this has been overlooked so far, index may be changed similarly as for atoms.

commit c6719db9d555d7c3f1b43c5cd90b1ccc2a8df1c8
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jun 21 06:45:30 2015 +0200

    FIX: atom_bondedparticle signatures changed to more const versions.
    
    - added getBond() for obtaining bond in const manner.

commit df3f2f34f6c9dbddae6f42d32b7a644c3b756eb8
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 20:29:39 2015 +0200

    Group item with atom count of 0 is confusing in QtMoleculeList, creating with empty string.

commit a963cf91fe5fac81f5a6c9c3e2c5d8100868fea3
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun Jul 19 12:03:05 2015 +0200

    executePythonScriptFile() calls executePythonScript() now.

commit 883ea068fbdbd4af0bcd8dfb11919f5f24ecb781
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jul 20 00:21:57 2015 +0200

    FIX: QTUIFactory's test-single was not working right.

commit 561b94558bc3dbfbf79f15bb042f3376517efa4c
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jun 19 19:35:50 2015 +0200

    FIX: tests/regression FragmentationAutomation had a white space after line break.

commit f27c2c5f268ff6d130b9e9d54bc176a6377242d0
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jun 19 13:51:08 2015 +0200

    FIX: Added molecuilderguitest to testsuite dependencies.

commit 7d146a387231de6a2198a250dbdbab1f1e9076bd
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jun 19 13:45:49 2015 +0200

    Added TriangleMatcher to safely compare tesselation .dat files.
    
    - is used in tests/regression Tesselations, tests/Tesselations, and has its own
      regression test, too.
    - added trianglematcher to testsuite dependencies.

commit d4c8694f2cbd423faa6c19ddec88eeb7e5f118a3
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 03:53:26 2015 +0200

    FIX: MakroAction's outputAsPython() uses outputAsPython() not outputAsCLI().

commit 9a48804bc9927b9c662e2653a5f08e7a1b65538b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 03:32:03 2015 +0200

    FIX: QtMoleculeListView caused Command to be executed when selection changed internally.
    
    - we check via selecting but change is propagated via emit. Now we use
      DirectConnection.

commit a87d1e2e1fdd4b7739a97a917c411937f941852d
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 02:56:26 2015 +0200

    FIX: ActionQueue::isIdle() states whether actions are executed or not.
    
    - QtUIFactory uses this to wait till test running next action.

commit 9ec4b8fd1c0781bcd20ad52c2755ad52ae89d518
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 02:42:44 2015 +0200

    FIX: Cuboid_impl::getNormal() did not take numerical imprecision into account.

commit bcf0561c44a090831a61ab4b4118c79b38750317
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 01:42:13 2015 +0200

    FIX: QtTimeLine would cause another WorldSetTime action.
    
    - we did not catch where setValue() was called from, from an obtained
      Observable update() or from changing the slider.
    - QtTimeLine needs DirectConnection for valueChanged.

commit 9fb2137ff4183dfa58b9083f255c8037873fb5ba
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 01:41:07 2015 +0200

    FIX: QtElementList now uses new updateElement().
    
    - old refill() polls complete list of atoms of specific type in the moment
      an atom is destroyed ... now we only get informed about newly created
      atoms (safe) and changing elements (also safe).

commit 92df042994f7c0a88d2ebb7c6506fd351ed68a39
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 01:39:28 2015 +0200

    TEMP: Removed QtLogBox for the moment.
    
    - ever and again causes SEGFAULT at QDebugStream::61 (QTextEdit::append()).

commit ea73ce1f1f7bfca1ca449bed235f03c42b10b58b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 00:09:10 2015 +0200

    Added QMutex to QtElementList for refill().

commit 7d0ddb4a2c0b433b55ce0a432f64c21bde6c9535
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 00:06:29 2015 +0200

    FIX: QtMoleculeItem would not correctly signOff prior to molecule being destroyed.
    
    - all QtMoleculeItems signOn to molecule::AboutToBeRemoved.
    - getMolecule() may return NULL, is caught at two places.
    - getMoleculeId() for allowing QtMoleculeList to acess molid.

commit 9d4f964574dae09a31c613751f654551f61f308a
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri Jun 19 10:50:48 2015 +0200

    FIX: QtHomologyList::refill() is now called via signal/slot.

commit 7d0a4e076689218b5c7275f30d0ca5ee9341af8b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jun 17 19:15:04 2015 +0200

    Storing the id of the main thread in static global variable.
    
    - this is preparatory for thread guard to be used in the context of Qt.

commit 9ad4d612899bb1547d6400f43c8330480c78d103
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jul 20 00:05:41 2015 +0200

    FIX: QtUIFactory copied to wrong argv.

commit 2a4b054470c32d7dfd7235c070c54dcdde1a99a0
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jun 17 19:01:13 2015 +0200

    FIX: GLWorldView was signed in to atomInserted and atomRemoved without any need.

commit 9b56f0a18eb8b397e931302e9b49b96672885279
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jun 17 19:00:55 2015 +0200

    FIX: GLWorldScene did not initialize SelectionMode properly.

commit 73b13cdd45329e4acbf0a0ca9dd9b780dac892d7
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jun 17 18:59:19 2015 +0200

    Extracted signing on to molecule into activateObserver.
    
    - is called by GLWorldScene after all "missed" signals have been emitted.

commit 9737db9c0d2798f3bb61807cda1a59701dc33939
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed Jun 17 18:58:32 2015 +0200

    FIX: QDebugStream is now thread-safe.
    
    - also Fix to QTextCursor not registered.

commit 4965922285cce1bd99002053cab2e8913e7fd819
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 16 20:37:07 2015 +0200

    QtInfoBox updates information on update signal.

commit 2f76d207662ae0c1e550c622a0d53f769646a691
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 15 23:01:19 2015 +0200

    FIX: Fixing atomicNumber_t atomicId_t in atomRemoved and atomInserted.

commit f759e5f2aa47178e7225d67a127028ed62570fdc
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 03:24:00 2015 +0200

    FIX: GLWorldView must not listen to moleculeRemoved but to its subjectKilled.
    
    - atoms of a molecule a removed after moleculeRemoved which only gives a prior
      note about the removal. Then, we are flooded with atomRemoved for each of
      its atom which go into MoleculeMissedStateMap and pop up when a same-id
      molecule is instantiated, causing assert failures.

commit 9c259e4ccaa1f9c8cabd00d1c1ca8e22e40a8199
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 11 09:33:58 2015 +0200

    FIX: GLWorldScene/View capture all missed signals for each GLMoleculeObject_molecule.
    
    - Taking note of subscribed molecules to sign Off on GLWorldView's destruct.
    - GLWorldView::recieveNotification() is checking for whether molecule actually
      exists still.

commit 8923ad833541d0d5da649e21cb7b6537558a282b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 8 19:05:01 2015 +0200

    Removed GLMoleculeObject_molecule's init() and reinit().
    
    - also removed InitAtomMap and associated code.
    - removed changeAtomId slot/signal in GLWorldScene.

commit 28864c30d2f893d3d3b12899626e0d2defa2da74
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 8 18:26:34 2015 +0200

    UIs are now initialized before any action takes place.
    
    - UIFactory::doneInitializing() is set after mainwindow is instantiated.
    - QTUIFactory::testrun() waits till UI is done initializing.

commit d619338ee65ee4df303696fa8a82dbf27e594f44
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 19:11:15 2015 +0200

    Removed lots of code in GLWorldScene that now resides in GLMoleculeObject_molecule.
    
    - atoms and their bonds are now controlled by the latter.

commit 8d3ee64e6d4d84d033921af0895634eccaec7466
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 19:10:49 2015 +0200

    FIX: GLMoleculeObject_molecule was not informed of atom index change.

commit 084304e6dfbb4c6567df7dac36d3cb925b2a0b8e
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 14:45:20 2015 +0200

    FIX: QtElementList does not have a changed() signal.

commit e7341ec2716284e96e58763befbd8fa9e68b27df
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 13:23:35 2015 +0200

    FIX: QtInfoBox now works mostly on ids.
    
    - slots are requested as ..Id_t and not as ptrs anymore for some time.

commit f3b5971ec8cc96538608d12dd2998861f1e187db
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 12:41:40 2015 +0200

    FIX: GLMoleculeObject_molecule() may overlap with atomInserted() signal.
    
    - this is because GLMoleculeObject_molecule takes some time till init() is
      called and its runs in a separate thread (hence, further atoms may be
      loaded into the just created atoms). As we first signOn() and then call
      init(), we may end up initializing atoms whose atomInserted signal then
      also comes in but lateron. This causes the AtomsInSceneMap to have
      double entries and the assertion to fail.
      We now keep book of all atomic ids inserted during init() and these
      are ok to appear doubly and their signal is skipped.

commit fac58f919238a82bc5d6cab2eb5c9621c85c941c
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 10:52:11 2015 +0200

    Converted FormatParser::save() to using vector of const atom ptrs.
    
    - required to change all save() functions in all parsers.

commit 99db9baca1782e208fb17d2cc6ace3f4cadb568b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 10:32:10 2015 +0200

    Replaced all World::getSelected...() to const version where possible.
    
    - also added const version of World::getSelectedAtoms().

commit a58c16f47065e9446b7916a407271c6544180022
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 21:16:02 2015 +0200

    Replaced World::getAllAtoms() by const version where possible.

commit f01769bf04baacedde88443ce16ab2f2dd809f30
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 18:57:36 2015 +0200

    Replaced World::getAtom() wherever possible by const version.
    
    - some AtomSet member functions now have const atom ptr instead of atom ptr.
    - molecule can return const and non-const AtomSet.
    - added FromIdToConstAtom to allow iterate through atoms in molecule (which
      are stored by id, not by ptr) in const fashion.
    - in molecule::isInMolecule() is now const, ::CopyMolecule..() is non-const
      (because copying involves father atom who is stored non-const).

commit 1259df9500410b59c3a56d9cf8d54624b53f97da
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 10:56:36 2015 +0200

    Replaced World::getAllMolecules() wherever possible by const version.

commit 63fb7a963007e0f94b955d96ca949cd435eacb2a
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 10:48:35 2015 +0200

    Replaced getMolecule() by const access version where possible.
    
    - so far this is done done via const_casting the World.

commit 795c0fbd35ce4d14a5986636e88a0fe5fcc53381
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 10:30:56 2015 +0200

    World::getAtoms() now has const versions as well.
    
    - this in turn required to adapt all AtomDescriptors and some fixes, e.g.
      predicate is now const member and works on const atom ptr.

commit 97445f1edda30c6d17472c562f9832a49df3e644
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 09:42:00 2015 +0200

    World::getMolecules..() now has const versions as well.
    
    - this required to adapt all MoleculeDescriptors accordingly.

commit 270bdface47b2d970089daba2ed78dc3f90395a7
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 09:22:29 2015 +0200

    atom::getMolecule() now returns ptr to const molecule.
    
    - changed some places where getMolecule() was used. Most of them required only
      const access anyway. World is allowed to const'cast the constness away as
      it commands over molecules anyway.

commit 9b3262b2e3b9296a0c5ea340ffa6b8b38a694615
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue Jun 2 12:43:49 2015 +0200

    FIX: molecule's Formula is not changed when atom changes element.

commit d12d818e7c101fa705af778bca10771e52c18690
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Mon Jun 1 09:42:19 2015 +0200

    DOCU: Corrected userguide.
    
    - this still needs some more work, e.g. w.r.t to code snippets indentation.

commit 599b3232e65ac3b245869d9dd63c45d7e8f162f4
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Thu Jun 18 03:53:44 2015 +0200

    FIX: createGuiChecks can handle multi-lines.
    
    - also we reduce verbosity by default.
    - redid all GuiCheck test scripts.

commit a4dee7ca90a18a6be133d405f7a0b0f5e8181d6d
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 31 18:00:52 2015 +0200

    tempcommit: Attempt to replace QtElementList::refill() by faster system.
    
    - this is not finished or tested as it is incompatible right now right refill().

commit 6b69594bcabc35afd7ab6ba170e610a1588c1df4
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 31 18:01:34 2015 +0200

    Molecule has new channel FormulaChanged used by specific QtMoleculeItem.

commit 74831898be603d80e0fe28f09943254aee55e893
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 31 17:59:56 2015 +0200

    FIX: World does not sign on to molecule changes.

commit 6b474e1aa04d153d6d0b68b8cf8de9ed806ef258
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 31 17:09:31 2015 +0200

    QtElementList now listens to AtomObserver and not MoleculeListClass anymore.

commit 69b434b1d1a5180a87c3d669024542593104c8e0
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri May 22 23:14:50 2015 +0200

    QtMoleculeItem now uses moleculeId_t instead molecule*.

commit 704d59ccf5f2559ab48b197552d1bea827b92ad2
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Fri May 22 22:18:58 2015 +0200

    Changed hoverChanged() from mol* to moleculeId_t.
    
    - also changed signatures for atom.

commit 34641b910ee6b9ce05b01bd6c5aa2e558ef54466
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 22:56:56 2015 +0200

    FIX: World does not to heed updates from internal MoleculeListClass.
    
    - there is not even an World::update() nor ::recieveNotifications().

commit eac542d5b19b04687918ad9252e1d9cb4adfc4cd
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 22:56:40 2015 +0200

    Fixed ObserverLog message in GLWorldView.

commit 2520ccbe1eb2cf5456bd770eedc0656bcef7846f
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 20:57:49 2015 +0200

    FIX: GLWorldScene::changeAtomId() reinserted with oldid instead of newid.
    
    - also fixed assertion message in GLMoleculeObject_molecule::atomInserted().

commit ec6abc5fcbede9d754e9e8267ef3dc93f92ab49a
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 20:05:31 2015 +0200

    FIX: QtMoleculeListView::moleculeSelected() did not check for presence of molitem.

commit 4669341c36fbec6d4f4114ed868a2c6ca3c34085
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 20:04:49 2015 +0200

    GLWorldScene::atomInserted() also adds NULL object to ..inSceneMap.

commit ef3013cd854f882cf600cfb78dc0c9cd4f78897b
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 19:37:52 2015 +0200

    GLWorldScene::moleculeInserted() gets moleculeId_t as param.
    
    - we must not use pointers to instances outside the Qt world as parameters.
    - we add NULL into MoleculesInSceneMap for moleculeRemoved to remove the entry.

commit c13b913f78b416eebfc6ff8ac0031329a4944e78
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Tue May 19 07:28:36 2015 +0200

    Gui is returning error code of 5 (in test mode) if (last) action failed.
    
    - this allows to take over return code checks in testsuite.

commit 068a852341119fad16f4f312d9ab6289fe0edd65
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 17 14:30:06 2015 +0200

    FIX: print on CommandHelp("help") not required in python regression test.
    
    - also fixed double disclaimer.

commit 7774f7e70f2ae517967d41e9125f5dba0adf1dbe
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Wed May 20 20:58:20 2015 +0200

    FIX: parser-parameters in regression tests basis and maxiter contained white spaces.

commit 23110a4092c457be30e89f88181ea2df46c504e5
Author: Frederik Heber <heber@ins.uni-bonn.de>
Date:   Sun May 17 10:04:04 2015 +0200

    FIX: Regression test set-parameters-mpqc undo compared against wrong file.
    
    - functionality is actually working and removed XFAIL_IF.
    - regression test set-parameters-mpqc had too many white spaces in
      parser-parameters.

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